Welker Lab

Base Editor Activity Reporter (BEAR)

The adenine and cytosine base editors (ABE, CBE) have enabled base-pair precision gene editing. BEAR is a plasmid-based reporter system that can be used to test the efficiency of ABE and CBE editors for almost any target sequence. The advantage of the BEAR reporter system is that it can be used to test the editing efficiency of targets independently of the genomic context.

Principle of the base editor activity reporter (BEAR) assay. BEAR consists of a split GFP coding sequence (green) separated by an intron of which splice donor site is altered to ‘AC’, resulting in a dysfunctional protein (grey). This inactive splice donor site can be rescued either by ABEs reverting the ‘AC’ splice donor site to ‘AT’ or by CBEs reverting the ‘AC’ splice donor site to ‘GC’, respectively. ‘AT’ and ‘GC’ are known to be functional non-canonical splice donor sites in the human genome.

Reference
Tálas, András ; Simon, Dorottya Anna ; Kulcsár, Péter István ; Varga, Éva ; Krausz, Sarah Laura ; Welker, Ervin
BEAR reveals that increased fidelity variants can successfully reduce the mismatch tolerance of adenine but not cytosine base editors
NATURE COMMUNICATIONS 12 : 1 Paper: 6353 , 14 p. (2021)